PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.045680.2
Common NameCsa_6G516730, LOC105435958
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 403aa    MW: 43895.4 Da    PI: 5.3342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.045680.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.8e-052993311754
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++   L++l+ +      +K + a++L +A+eYIk L
  Cucsa.045680.2 299 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 331
                     55666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-5292335No hitNo description
SuperFamilySSF474591.96E-9292336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-7296335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAEDFQAPVC GDNWWNSSRS MLVAVGGLSP CSVGIADLSW PPQPPSAATD SVNNNSSMLF  60
QDYSTFQMMG FALSSSTTSE HWNQSQDLLN SNGIPTNFSS ENGLKQGNDG DDYLNCSSTN  120
TTNCQGGLFP VESSLYGYSS PSTKLLQTNL YEDDNSDPHS LFNSTPSITT NSTTFPTNIN  180
PPNHLSLSST PSFSSNYLVK PSLPNPQPHL QFTNNTPFWN ASSSNSIPQG IASLLEDKNN  240
PKSQNNTLAF KSVNEDGQDQ VKKGDKNSAI TTEPTVFKRP RIETPSPLPT FKVRKEKLGD  300
RVTALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVLSTPY MKSNNGITPV QHQQVSEKAN  360
HDSPKQDLKS RGLCLVPISS TFPVTNATTT DFWTPTFGGT FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658178.10.0PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBLA0A0A0KHH20.0A0A0A0KHH2_CUCSA; Uncharacterized protein
STRINGVIT_00s0274g00070.t014e-96(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.33e-55bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]